SE3130165

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10762
  • Fragaria vesca
  • SE3130165
  • hAT
  • Frvh22
  • LG3:15450413-15450818
  • GCTAATTA
  • TAATTACAGTGGTGGAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GC      --            ------CA      C CCCCCCCCAAGTAAAAAGCTCAAAAACAAATATTTTTCCCCCATAAATTTACCATGAAAAAGAAGATAAATACAGTGAATCTCATTAAGAATACTAGTTAAATGGAAAATAATTGTCACAAATATGATATTATGATTAGATAACACAAAATTAAACTGATTTTAACCTAT
  TAATTA  CAGTGGTGGAGC        GAATTT A                                                                                                                                                                          
  ||||||  ||||||||||||        |||||| |                                                                                                                                                                          C
  ATTAAT  GTCACTGCCTTG        CCGGGC C                                                                                                                                                                          
        CG            ATGTAATG      - CTCCCAGGCCTGGAGCCAACCCAAAAAATTAACAGAATTAATGGAAATTAACCCATCAAATCAATATCCGCATTTAAATGGGAATTAAAACAATTACTTGAGGGGGATATAATATCGGTTTAGACTAAAGCAAGTTTATAATTATAAATAATCAAGTTTGAATTTGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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