SE3120166

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10763
  • Fragaria vesca
  • SE3120166
  • Mutator
  • FrvM1
  • LG3:6475901-6476108
  • TATACTCNG
  • GCATAGGGGGCTGAAATTTACACACCCCTTTTTACAATCCACACACCGCTGCCCCACTTTTTATAAAAAAATGTCTAAAATGTCCCTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCAAA  ATA     C               CC                    CTG    A          A            A     C   CCTAGACAACTT
                     GC   GGGGG TGAAATTTACACACC  TTTTTACAATCCACACACCG   CCCC CTTTTTATAA AAAATGTCTAAA TGTCC TAT            
                     ||   ||||| |||||||||||||||  ||||||||||||||||||||   |||| |||||||||| |||||||||||| ||||| |||             
                     CG   CCCCT ACTTTAAATGTGTGG  AAAAATGTTAGGTGTGTGGT   GGGG GAAAAATATT TTTTACAGATTT ATAGG ATA            
                  ATA  AAA     C               AT                    AAA    A          C            G     T   AAATTAAAGAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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