SE3160172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10769
  • Fragaria vesca
  • SE3160172
  • Micron
  • FrvMi1
  • LG6:8548419-8548865
  • TATATAT
  • TATATATATATATATATAGTCCCTATCCAGAGCGAAGCTTTGCTCTGAAATTAAAGTGTGAAGTTCCTTATTTGACACACTTTTCAGTCATATTTCCACATCTTCACCGTTCAGTTTGTAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
                                          C                       C            C     A                                 A  ------ACCAA   C        C   -             -      T               GT   TAATTGTGATTTACACAAACAGTTCTGGTTAGAC
TATATATATATATATATAGTCCCTATCCAGAGCGAAGCTTTG TCTGAAATTAAAGTGTGAAGTTC TTATTTGACACA TTTTC GTCATATTTCCACATCTTCACCGTTCAGTTTGT GA           ATG ATAGATCA TTC TGCAAAATTTCAT CAAATT GATGATCGTTTGGGT  TCA                                  
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||           ||| |||||||| ||| ||||||||||||| |||||| |||||||||||||||  |||                                  A
ATATATATATATATATATCAGGGATAGGTCTCGCTTCGAAGC AGACTTTAATTTCACACTTCAAG AATAAACTGTGT AAAAG CAGTATAAAGGTGTAGAGGTGGCAAGTCAAATA CT           TAC TATCTAGT AAG ATGTTTTAAAGTA GTTTAA CTACTAGCAAATCCA  TGG                                  
                                          A                       A            A     C                                 A  ATAATTACATA   A        -   T             A      -               --   CTTAATCCAATTTATTTACTTGCTTGGTATTTAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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