SE3150175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10772
  • Fragaria vesca
  • SE3150175
  • PIF/harbinger
  • FrvP18
  • LG7:11602829-11603342
  • GAG
  • TAATGCAGGACC

Secondary structure and sequence

TSD    TIR
5'



3' 
GAGAG        G   TA    -  AGAAGCCATTAAAGGTCTATAAGAGACGAGGCAAAGAAGGTTCCAAGGCTCAGGCTTTGATCTGGCATTCAGTAGATGATGATGTGTCTACATGGGATCTTGCTTGATGCATGCGGGCATCAGCAAGATTTGCCTAGCTTTGGAAAGATTATGATTTCTTTCTTATTTGGGATTTGTTTTGTTATTGGGAATCTTTTAAGTTCTAGGTTATTAGGGTTACTTGATCCTAATT
     TAATGCAG ACC  AATG GC                                                                                                                                                                                                                                        
     |||||||| |||  |||| ||                                                                                                                                                                                                                                        G
     ATTACGTC TGG  TCAT GA                                                                                                                                                                                                                                        
GAGAG        G   --    T  ATTCTTGAATTTATGATCCCAAATAATCCTCCTTAATCCAATGTCTTTATACTTCCTATCTTACTTTTGATGACTATAGTGTGGTCATCTTGGAGTCCGTAGTGTGGTCTCCCATCCGACGTAGTGTGTTTGGGTTTATCTTTCGTTTCGAGAGTTTGAAAATAATTAGGGTGAGACTCTTGTTTTCTGATGTTTTCTGGAGATATATATCTCTCCATTTCTTTTGGATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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