SE3120179

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10776
  • Fragaria vesca
  • SE3120179
  • Mutator
  • FrvM12
  • LG2:2088524-2088924
  • TAATTAAAT
  • GGATAAGGCTAGGGTGTGCTAATGCATGTCATGCATCAACTCTGTCATAAAATTGTAACA

Secondary structure and sequence

TSD    TIR
5'



3'
TAATTAAATCA   TA GG   G    T C     C           C              A        CAAGTCCTCAAAGTAGTAATAAT                               G      -  T                   A              --------------------   T      A    C       T    CAACT
           GGA  A  CTA GGTG G TAATG ATGTCATGCAT AACTCTGTCATAAA TTGTAACA                       AGTCCTCAAAGTTATAATGTGAGTCCTTAAA TTGTAA AA TTTAGTTACAACATTAGTC TCATGTGTCGTTAA                    AGT GTAATT AGTC TCAAAAT GTAA     
           |||  |  ||| |||| | ||||| ||||||||||| |||||||||||||| ||||||||                       ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||| ||||||||||||||                    ||| |||||| |||| ||||||| ||||     T
           CTT  T  GAT TTAC C ATTAC TACAGTATGTA TTGAGATAGTATTT AACATTGT                       TCAGGAGTTTCAATATTATGCTCAGGAATTT AACATT TT GAATTAATGTTGTAATCAG AGTACACAGCAATT                    TCA TATTAA TCAG AGTTTTA TATT     
  ACTAAATTA   TG AA   G    T A     A           T              C        ---------------------AC                               A      A  T                   G              TAACATTTTACACACAAATT   C      C    A       C    TTCTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End