SE3160181

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10778
  • Fragaria vesca
  • SE3160181
  • Micron
  • FrvMi1
  • LG3:20603280-20603699
  • CATATAT
  • ATATATATACAGTTCCTATCCAGAGTGAAGCTTCGCTCTGAAATTAACGTGTGAAGTTCTTTATTTGACACACTTTTCGGTTATATTTCTACATCTCCACCGTTCATTTTGT

Secondary structure and sequence

TSD    TIR
5'



3'
C    A        T                       C         C                        C                                 T     ATAACCA    C   GATCAC   -             -      T               GTTCATAATC   ATTTACACAAACAGTTATAGTTAGACATAT
 ATAT TATACAGT CCTATCCAGAGTGAAGCTTCGCT TGAAATTAA GTGTGAAGTTCTTTATTTGACACA TTTTCGGTTATATTTCTACATCTCCACCGTTCA TTTGT       AATG ATA      TTC TGCAAAGTTTCAT CAAATT GATGATCGTTTGTGT          GTG                              
 |||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||       |||| |||      ||| ||||||||||||| |||||| |||||||||||||||          |||                              T
 TATA ATATGTCA GGATAGGTCTCGCTTCGAAGTGA ACTTTAATT CACACTTCAAGAAATAAACTGTGT AAAAGCCAATATAAAGATGTAGAGGTGGCAAGT AAATA       TTAC TAT      AAG ACGTTTTAAAGTA GTTTAA CTACTAGCAAATACA          TGG                              
A    C        -                       T         T                        A                                 C     ACTATAA    A   -ATAAT   T             A      -               ----------   CTTAATCCAATTTAGTTACTTGTCTGATAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End