SE3160182

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10779
  • Fragaria vesca
  • SE3160182
  • Micron
  • FrvMi4
  • LG2:17437146-17437547
  • TATATAT
  • TATATATATATATATACAGGAAGGATATGAAGCGGAC

Secondary structure and sequence

TSD    TIR
5'



3' 
                          A  A  C    ----------         CGGCTTAAAGTGCGGACATCCAGTGCGGACGTCCGTCCGTTCTCCACCCTCCGGTGCCGGCGCCGGCGCGCCTCCACCCCAGAAGACTCCAGCAGCGTCCCCGACCACTTTCCCTCCCCGGCGAGTCCATTCTTTTCCGGTTTTCCGGCG
TATATATATATATATACAGGAAGGAT TG AG GGAC          GTCCGCACT                                                                                                                                                      
|||||||||||||||||||||||||| || || ||||          |||||||||                                                                                                                                                       
ATATATATATATATATGTCTTTCCTA AT TC CCTG          TCACGCCTG                                                                                                                                                      
                          C  C  A    CAGCCGAATT         CAGGCAGGCAAGAGGTAGGAGGCCGCGGCCGCTGCCGCGCGGAGGTAGGGTCTTCTGAGGTCGTCGTAGGGGCTGGTGAAGGGGAGGGGCCGCTCAGGCAAAAAAGGTCAAAGGCCGCTCTAGCTGAAACAAACTTCAAAACCCACTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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