SE3120185

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10782
  • Fragaria vesca
  • SE3120185
  • Mutator
  • FrvM21
  • LG6:8582345-8582761
  • TATAGTTAT
  • GGGAAAATATTTATTTCCGGACTAGTATGTACATGTGTGTCCGGACTCTCTCATGATTACATACTTTTGCCAATATAAATCATAATATTAACTTTTTAAAAGTTGAATTAACCAATATAGATCACCTCTGTGAAAAATAAATTTAATAAAAAATCGTTTGCTCAGCCAAACAAATGGAAGGTT

Secondary structure and sequence

TSD    TIR
5'



3'
TATAGTTATA          T   T  C             CA         G        C  GA            GC    A           A      T    A     G            T    CAC             A   T   TA    A         C   ---------C        G  A    GATC      CTGG
          GGGAAAATAT TAT TC GGACTAGTATGTA  TGTGTGTCC GACTCTCT AT  TTACATACTTTT  CAAT TAAATCATAAT TTAACT TTTA AAGTT AATTAACCAATA AGAT   CTCTGTGAAAAAT AAT TAA  AAAA TCGTTTGCT AGC          AAACAAAT GA GGTT    ATGAGA    
          |||||||||| ||| || |||||||||||||  ||||||||| |||||||| ||  ||||||||||||  |||| ||||||||||| |||||| |||| ||||| |||||||||||| ||||   ||||||||||||| ||| |||  |||| ||||||||| |||          |||||||| || ||||    ||||||     
          TCCTTTTATG ATG AG CTTGATCATACAT  ATACACAGG CTGAGAGA TA  AATGTATGAAAA  GTTA ATTTAGTATTA AATTGG AAGT TTCAA TTAATTGGTTAT TCTA   GAGACATTTTTTA TTA ATT  TTTT AGCAAACGA TCG          TTTGTTTA CT TCAA    TACTTT    
  GATATTGA          T   C  A             AC         A        A  --            AT    C           G      C    A     G            T    TTA             G   C   TG    A         A   TCTAACGTTA        G  G    -GAC      CAAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End