SE3160191

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10788
  • Fragaria vesca
  • SE3160191
  • Micron
  • FrvMi1
  • LG7:7271431-7271863
  • TATATAT
  • TATATATATATATACAGTTCCTATCCAGAGTGAAGCTTCACTTTGAAATTAAAGTGTGAAGTTTATTATTTAACTCACTTTTCGGTCATATTTCCACATCTCCACTGTTCACTTTGTAGAACCTAATGCATAGATCACTCCTGCCAAGTTTCATTGAATTTGATGATCGTTAAGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
                   C  ATC          C    C                       A      A                      C                                             C                              AA   ACCGAA     TTAAATCGACGA      CATAAA    TCT
TATATATATATATACAGTT CT   CAGAGTGAAG TTCA TTTGAAATTAAAGTGTGAAGTTT TTATTT ACTCACTTTTCGGTCATATTTC ACATCTCCACTGTTCACTTTGTAGAACCTAATGCATAGATCACTC TGCCAAGTTTCATTGAATTTGATGATCGTT  GGT      TTATA            ACGAAC      TCTG   
||||||||||||||||||| ||   |||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||      |||||            ||||||      ||||    
ATATATATATATATGTCAA GA   GTCTCGCTTT AAGT AAACTTTAATTTCACACTTCAAG AATAAA TGAGTGAAAAGCCAGTATAAAG TGTAGAGGTGGCAAGTGAAACATCTTGGATTATGTATCTAGTGAG ACGGTTCAAAGTAACTTAAACTACTAGTAA  CCA      AGTAT            TGTTTG      AGAC   
                   A  CAA          C    A                       G      C                      T                                             T                              AC   ----AA     TAGCAATAAATG      ---TCA    TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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