SE3150192

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10789
  • Fragaria vesca
  • SE3150192
  • PIF/harbinger
  • FrvP5
  • LG3:7582698-7583059
  • TAT
  • AGGCCTCGTTTGGTTCGCGGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTT            GT   C         AATAGTTTCTTCCTCTTTCTCATGGGAAAGGAAAGAGAAGATGAATGAAATTTTATAAGAACTTTCTATTCCGATGTTTGGTAACACCAGGAAAATCTATTGAAAAGTTGTTAAAAAGTTGAGATTCAATATGATAAGAAATTGTGTTGTGA
                     AGGCCTCGTTTG  TCG GGAAGGGAA                                                                                                                                                        
                     ||||||||||||  ||| |||||||||                                                                                                                                                         
                     TCTGGAGCAAAC  AGT CCTTTCATT                                                                                                                                                        
                   AT            AA   A         CGTAGTCCTTTCTTTTCAACAAGTAAAAGTCACAAACCCTTTCGTATTCCTTTACTTTGTGAAAGAACTAACTACCCTTTTATACCCTCTTTCACCAAGGAAGGTTTTAGGATTCATTAGTGAAAAGAAAGAAGAAAGAGACGTAAATAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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