SE3120194

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10791
  • Fragaria vesca
  • SE3120194
  • Mutator
  • FrvM11
  • LG2:9330007-9330523
  • TAATCTTTT
  • TGGACTAATTTCAGTTTACCCCCATCAACTTTAGTTCGATCATCATGTTA

Secondary structure and sequence

TSD    TIR
5'



3'
TAATCTTTTT                                  T     C         ATATA        C                   C                   AA       G   AA   A        C      CC  A   T  A     -TT              AC       AAA   GCTAAACCCATAAAAAAAAGACAAAATAGACAAATTGCATTCAATCCCACCAAAATTATTAAGGTT
          TGGACTAATTTCAGTTTACCCCCATCAACTTTAG TCGAT ATCATGTTA     TTTTTTTT AATTTCATCAAAAACACCT TCAACTTTTAATTTTCATC  CCGTGTC AAA  TCT TTTTTCAT CAATTC  CC TCA GT ATGAC   GTATTAAGAAGAAA  CAAATTT   GTC                                                                  
          |||||||||||||||||||||||||||||||||| ||||| |||||||||     |||||||| ||||||||||||||||||| |||||||||||||||||||  ||||||| |||  ||| |||||||| ||||||  || ||| || |||||   ||||||||||||||  |||||||   |||                                                                   
          ACCTGATTAAAGTCAAATGGGGGTAGTTGAAATC AGCTA TAGTACAAT     AGAAAAAA TTAAAGTAGTTTTTGTGGA AGTTGAGAGTTAAAAGTAG  GGCACAG TTT  AGG AAGAAGTA GTTAAG  GG AGT CA TACTG   CGTAGTTCTTCTTT  GTTTAAA   CTT                                                                  
  TTTTTTCT                                  C     A         CAGGA        A                   T                   AC       G   GG   C        A      TA  C   T  C     CAC              CA       --G   TTTTTATTGTAAAGACTGGTAAAAGGGGGTATAGCTATGTGTAAAGGCATGGGTAGTGTTGGGGGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End