Plant MITE

SE3120197

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10794
Fragaria vesca
SE3120197
Mutator
FrvM2
LG6:23318080-23318321
TATACTCNG
ACCAGTTGGGAAATTATTATTTGTACCTGGAACACCAC

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCAC  CA  -    A       A                   ATGTTTT    TCTCCTTTAATCTTATTGGTCCACGTGTTTTATATATCCTTATTTCTGATTGGTGTATTAAATTACTTTTCCT
                     AC  GT TGGG AATTATT TTTGTACCTGGAACACCAC       ATGT                                                                         
                     ||  || |||| ||||||| |||||||||||||||||||       ||||                                                                          
                     TG  CA ACTC TTAATAA AGACATGGGCCTTGTGGTG       ACCG                                                                         
                    T  AC  C    A       G                   ------C    TGACGGTCTACAACATGGGCCGGTTAGTATATTGAGTCTAAGTACACCCCTGATCGTGCCCTACCCTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120197

TATACTCNGTCATNCTNNCACACCAGTTGGGAAATTATTATTTGTACCTGGAACACCACATGTTTTATGTTCTCCTTTAATCTTATTGGTCCACGTGTTTTATATATCCTTATTTCTGATTGGTGTATTAAATTACTTTTCCTTTTTTTTCCCATCCCGTGCTAGTCCCCACATGAATCTGAGTTATATGATTGGCCGGGTACAACATCTGGCAGTGCCACGTGGTGTTCCGGGTACAGAGAATAATTACTCACACCAGTT

Copy Cancel