SE3120199

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10796
  • Fragaria vesca
  • SE3120199
  • Mutator
  • FrvM12
  • LG3:9338841-9339284
  • TATTAATTA
  • TATTAATGCATGTGA

Secondary structure and sequence

TSD    TIR
5'



3'
TATTAATTACTGAAAAATTCTACAATA           G   ATGATATGA           -----------      T            C                     C             T     A        TT TC                AA    G                 AA  T  G        GA    TT          ---     TAAAAA
                           TATTAATGCAT TGA         TGCATCAACTT           TGTAAA TGAGTCCTCAAA TAGTAATATTAGTCCTCGAAG TGTAATATGAGTC TTAAA TTGTAAAA  T  TAGTTACAACATTAGT  TTAT TGTCTTTAAAGTGGTAA  TG GT TTTAAAGT  TAAT  AGTCCTTAAA   GTGAT      
                           ||||||||||| |||         |||||||||||           |||||| |||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||||||  |  ||||||||||||||||  |||| |||||||||||||||||  || || ||||||||  ||||  ||||||||||   |||||       
                           ATAATTACGTA ACT         ACGTAGTTGAA           ACATTT ATTCAGGAGTTT ATCATTATAATCAGGAGTTTC ACATTATACTCAG AATTT AACATTTT  A  ATCAATGTTGTAATCA  AGTA ATAGGAGTTTCACCATT  AC CA GAATTTCA  ATTA  TCAGGAGTTT   CATTG      
  TCATTAATTCCCATTCCAATCCCAC           G   ---------           ACAGGAGCTCA      T            T                     A             C     C        TT TA                GG    A                 -A  T  G        AC    -C          TAA     TTGATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End