SE3130200

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10797
  • Fragaria vesca
  • SE3130200
  • hAT
  • Frvh9
  • LG3:22569979-22570714
  • GCTGCTAC
  • GCTACCAGTGGCGTA

Secondary structure and sequence

TSD    TIR
5'



3'
GCT  TA    T      --   A AAACCACAAGTAGAAGGGTCAAGAGTTTAAACAATAATGCCACACAAAATAAAAATATAATTTTTATTGAATAATATAAAAACTTATAAATCATTAGAATACTTTGAAAACAAAAGCTAAATAAAATAACAAATCTCCCTAAAGTAATTATAATTGTCCTTGACGATTGCTCATATTTTAAAATTTTGGAGGAGCTTCAGATGGAGTCGACTGTTTTACTGCTTTTATCTTACGATACTTTCAAATAAAAACTAAAACATCCATAATTGCAAGTTTTTAATTATGAAGGTTATCGACGANNNNNNNNNNNNNNNNNNNNACTGTTTATATAGAGGTGCACGAGA
   GC  CCAG GGCGTA  GCT G                                                                                                                                                                                                                                                                                                                                                        
   ||  |||| ||||||  ||| |                                                                                                                                                                                                                                                                                                                                                        A
   CG  GGTC CCGCAT  CTT C                                                                                                                                                                                                                                                                                                                                                        
CAT  TC    C      TC   - CCCCCCAGTTCCCCAAGTCGACTGGAGGGAGTGTAAAAAATAATTCAGTATAACAATAGATTAAACAGTCAACTTTACACTACAACTGTGATAAAACTGGGAAGATTGATTAATTTCTTTTTAAACCGTATATTTTATAATTAATGTTGTTAGTTAAACCTGTCTCCTCACAAGTTGAGGAGTGCACACAAACAATGCACACCAAAAAAAAAATTATATACAAAGATTAGGCTTAGTTACTAACTAACGTAGAGGGAAATTATAATGTTAATTTTGTATAAGGATCAAAAAAAAACAAGAAAATTAATTATACAAAAGGATTAGTTTGTTAATAACACTAACTA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End