SE3130203

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10800
  • Fragaria vesca
  • SE3130203
  • hAT
  • Frvh25
  • LG7:8836229-8836806
  • CTTAAAAC
  • CAAGGAAGAAAAAATC

Secondary structure and sequence

TSD    TIR
5'



3' 
CTTAAAAC            AA  ----------  -     TCAGCGATATATCGCCGAAATTTTCGTTTTTTTCATCTAGTAATATATTTTTCCCTCCTAAGCATTTCTCGTCCAAAACTCCCAATATTTCTCGATATTTCCGAAAAATCCTGATATTTCCGATATTTCCAACCAATACTAGTGAAAATTTTGTACCTCATAGGTCTTCTACGTGGTTTTGAAGCACTCATGTAATTCCATGTGAAATGTATCATATGTATATAAGGCGTGATGATCTAGCCTCTCTTTGGG
        CAAGGAAGAAAA  TC          GA AAGTT                                                                                                                                                                                                                                                            
        ||||||||||||  ||          || |||||                                                                                                                                                                                                                                                            T
        GTTCCTTCTTTT  AG          CT TAAAG                                                                                                                                                                                                                                                            
CAAAATTC            AA  CCACTAATAC  T     CCAAGCCCCTTTATAGCTAACATCATTTTTTTACTCTTTTAACTGCCTTTAAATTTCTTTTTGTTCTTTTAAAATTTGGTTTGAAATTCTCTACAAACAAAAGATATAATACATAATATAAACTTTACTTTTGGAACTTATTTGTAATTAGATATCCCTCAACATCATTCAATTCCACTTTACAATCACAACTTGGCAATTATTAAAAATTTTCAAATAAAATTTGTAAAAAAATTTAAAAAATACCGACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3