Plant MITE

SE3120205

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10802
Fragaria vesca
SE3120205
Mutator
FrvM24
LG6:36288378-36288554
AAAGAGGTC
GGATACAAATTTACCGACCATCTTTATTTACCCATCAAAGTGCTCACTCTCTTAATCTATTAACACATGTCAATTTTATT

Secondary structure and sequence

TSD TIR

5'

3'

AAAGAGGTC            A             T  A            C           A               --------------C         ATC
         GGATACAAATTT CCGACCATCTTTA TT CCCATCAAAGTG TCACTCTCTTA TCTATTAACACATGT               AATTTTATT   
         |||||||||||| ||||||||||||| || |||||||||||| ||||||||||| |||||||||||||||               |||||||||    
         CCTATGTTTAAA GGCTGGTGGAAAT AA GGGTGGTTTCAC GGTGGGAGAAT AGATAATTGTGTACA               TTGAAATAA   
CTGGAGAAA            C             C  C            A           C               TAAAAGTTTAATAAA         GAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120205

AAAGAGGTCGGATACAAATTTACCGACCATCTTTATTTACCCATCAAAGTGCTCACTCTCTTAATCTATTAACACATGTCAATTTTATTATCAAGAATAAAGTTAAATAATTTGAAAATACATGTGTTAATAGACTAAGAGGGTGGACACTTTGGTGGGCAACTAAAGGTGGTCGGCAAATTTGTATCCAAAGAGGTC

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