Plant MITE

SE3120223

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10820
Fragaria vesca
SE3120223
Mutator
FrvM22
LG7:1579815-1580012
CATGTTGTT
CATG

Secondary structure and sequence

TSD TIR

5'

3'

         TTGTT                               C         A                              ACTTTCACTCTTT    TA
     CATG     GGAAGCAAATTTGCTCCCCACCATTTGCTCC CACCCTTCT CCCCACCCCTTTGGATGAATGACAAGTGTT             TTGT  
     ||||     ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||             ||||   
     GTAC     CCTTCGTTTAAACGAGGGGTGGTAAACGAGG GTGGGAGGA GGGGTGGGGAAACCTACTTATTGTTCACAG             AATA  
TTGTT    -----                               A         -                              -AAAATTTAAATT    AA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120223

CATGTTGTTGGAAGCAAATTTGCTCCCCACCATTTGCTCCCCACCCTTCTACCCCACCCCTTTGGATGAATGACAAGTGTTACTTTCACTCTTTTTGTTAAAATAATTAAATTTAAAAGACACTTGTTATTCATCCAAAGGGGTGGGGAGGAGGGTGAGGAGCAAATGGTGGGGAGCAAATTTGCTTCCCATGTTGTT

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