SE3160225

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10822
  • Fragaria vesca
  • SE3160225
  • Micron
  • FrvMi9
  • LG4:21151754-21152182
  • TATATAT
  • TATATATACACACAGTTCCCTTTCAGAGCGGGACACCGCTTTGAAATTAAAGTGTGGTGCTCCTCATTTTGCTCACTTTCAGGTCGTTTTTCCACATCTCCACCGTTCAGTGTCTAGAACATAGTGTGTAGATCATTCCTGTAAAGTTTCATCTAATTTGGAAATCATTTG

Secondary structure and sequence

TSD    TIR
5'



3'
                            C                             G      A                  C                  CG             ---                    C                       A        A  TTTTGTAATCGTGATTTATACGAACGGTTCCGTTTGGA
TATATATACACACAGTTCCCTTTCAGAG GGGACACCGCTTTGAAATTAAAGTGTGGT CTCCTC TTTTGCTCACTTTCAGGT GTTTTTCCACATCTCCAC  TTCAGTGTCTAGA   ACATAGTGTGTAGATCATTC TGTAAAGTTTCATCTAATTTGGA ATCATTTG GC                                      
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||  |||||||||||||   |||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||                                      C
GTGTGTGTGTGTGTCAAGGGAAAGTCTC CCCTGTGGCGAAACTTTAATTTCACACCA GAGGAG AAAACGAGTGAAAGTCCA CGAAAAGGTGTAGAGGTG  AAGTCACAGATCT   TGTATCACACATCTAGTAAG ATATTTCAAAGTAGGTTAAACCT TAGTAAAC CC                                      
                            A                             A      C                  A                  TA             TCT                    T                       C        -  ATGGCTTAATCCAATTTACTTAGTTGACTTGTTTTATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End