Plant MITE

SE3120226

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10823
Fragaria vesca
SE3120226
Mutator
FrvM42
LG5:23388732-23388907
TATACTCNG
GTTAAT

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNC      TTGT   AAT    GTA                A    ACACAATCTTAACCGTTCATAACAATT       --T   C  CC  GTTTCTATAT
                  GTTAAT    GGA   TCTT   TACACGACGTGTATTT CACG                           CATATAT   TGG CA  AT          
                  ||||||    |||   ||||   |||||||||||||||| ||||                           |||||||   ||| ||  ||          T
                  TAATTG    TCT   AGAA   ATGTGCTGCACATAGA GTGC                           GTATGTA   ACC GT  TA          
               GTT      ---C   CGT    GTC                A    -------------------------AT       CTT   A  TC  ATCTCCTTTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120226

TATACTCNGTCATNCTNCGTTAATTTGTGGAAATTCTTGTATACACGACGTGTATTTACACGACACAATCTTAACCGTTCATAACAATTCATATATTTGGCCACCATGTTTCTATATTATTTCCTCTAATCTTGACCATTCATGTATGTACGTGAAGATACACGTCGTGTACTGAAGATGCTCTCGTTAATTTG

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