SE3160229

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10826
  • Fragaria vesca
  • SE3160229
  • Micron
  • FrvMi2
  • LG4:4658321-4658700
  • TATATAT
  • TATATATATATATATACACAGTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                 AC    CGGA       C            -    TCCATTCTCCACCGTCCGGCGCCGACGACGGCGCACCTCCACCCGAGCAGACATCAGAGGGGTCCCCGATCACTTTCCTTCCCCAGCGAGTCCGTTGAATTCCAGTTTTCTGGCGAGATCGATCTTGTCTGAAGTTTT
TATATATATATATATAC  AGTC    TCAGAGG GGACGTCCGCAC TCCC                                                                                                                                          
|||||||||||||||||  ||||    ||||||| |||||||||||| ||||                                                                                                                                          G
ATATATATATATATATG  TTAG    GGTTTCT CCTGCAGGTGTG CGGG                                                                                                                                          
                 CC    -TAA       -            T    AATTTCACGCCTGCAGGGAGACAAGAGTTCGTCCGAGGCTACTGCCGCGCGGAGGTGGGCTCGTCCGTGGTTGCCACAGGGGCTAGTGAAAGAGAAAGGCCACTCTAGCTAAACTTCCAGACACGTCGTTGGAGGTGG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3