SE3120231

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10828
  • Fragaria vesca
  • SE3120231
  • Mutator
  • FrvM6
  • LG5:24926738-24926925
  • TATACTCNG
  • TTCTTGAAAGGGTATTGCTATTAACACACTCATTTTTACTATTAACACACCTTATTTAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNC   TT   A    AT                AT    A             TT      TTTC    CCACACATTTTTATTTTATTACAAACTTG
                  TTC  GAA GGGT  TGCTATTAACACACTC  TTTT CTATTAACACACC  ATTTAT    TTAT                             
                  |||  ||| ||||  ||||||||||||||||  |||| |||||||||||||  ||||||    ||||                             C
                  AAG  CTT CCCA  ACGATAATTGTGTGGG  AAAA GATAATTGTGTGG  TAAATA    ACCA                             
                 A   TT   -    CC                AT    C             --      ---T    CTCTTGGTTAATAGTTAGTTTAAGTTCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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