SE3160234

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10831
  • Fragaria vesca
  • SE3160234
  • Micron
  • FrvMi3
  • LG7:4988985-4989424
  • CACACAC
  • ACAATGCTGATCAGGTAAGGACCTCCTTACCGTAGCTAAGGTACGGATTTCTTTATTCGACCCACTTTTCGATCACATTTTCTTATCTTAACCGTTCAGTATCTAGGTATATATGAGTAGATCATCTCTACAAATTTTTAGCCAAATTGATAATCGTTAAGGCATTCAAAACTGTGATTTAGA

Secondary structure and sequence

TSD    TIR
5'



3'
CACACACACAC   A G  GA                     G   C       C           -TTC    C            C           T  A C         C             G            A  A         C  A   ATA          C   C    C    AT     GTTA        -TA   T  A GAT
           ACA T CT  TCAGGTAAGGACCTCCTTACC TAG TAAGGTA GGATTTCTTTA    GACC ACTTTTCGATCA ATTTTCTTATC TA C GTTCAGTAT TAGGTATATATGA TAGATCATCTCT CA ATTTTTAGC AA TTG   ATCGTTAAGG ATT AAAA TGTG  TTAGA    AATGAACG   CGG TC G   
           ||| | ||  ||||||||||||||||||||| ||| ||||||| |||||||||||    |||| |||||||||||| ||||||||||| || | ||||||||| ||||||||||||| |||||||||||| || ||||||||| || |||   |||||||||| ||| |||| ||||  |||||    ||||||||   ||| || |    
           TGT A GA  AGTTTATTCCTGGAGGAATGG ATC ATTCCAT CCTAAAGGAAT    CTGG TGAAAGGCTAGT TAAAAGAGTAG AT G CAAGTCATA ATCTATATGTATT ATCTAGTAGAGA GT TAAAAGTCG TT AAC   TAGTAATTCC TAG TTTT ACAT  AATTT    TTACTTGC   GCT AG C   
ATATATATATA   C G  AA                     A   A       A           TAAA    A            A           T  C A         A             A            C  C         A  A   CAA          A   C    -    --     --AG        TTG   T  A AAG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End