SE3130241

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10838
  • Fragaria vesca
  • SE3130241
  • hAT
  • Frvh32
  • LG3:9988149-9988771
  • TCGGTGGG
  • CGGTGGGCAGTGGCGTAG

Secondary structure and sequence

TSD    TIR
5'



3'
T G  G             ---------------     -  AG  CGAGAAGGGTCAATTGACCCTTCTAGCTATTTGGCTTCTAGCTATTTGAATTAAGCAGCCATTGGTTGAACTATTTGGTAATCACATATATAAACTATAATTAATGACCCTCCTCACATAAGAAAATCTGTAAAATTGAAACGGAAGATGATCAAAAGTTTTGATCTTATGGCCCATTCACCCCACAAGTCCAGTGTTTGGACGGGTGTCCACCATGTTTTAACTTTTTACTGCATTTTATTTATTAAGTGGCCAATTAATAATGATTATGTCC
 C GT GGCAGTGGCGTAG               GGAGG GT  GG                                                                                                                                                                                                                                                                                  
 | || |||||||||||||               ||||| ||  ||                                                                                                                                                                                                                                                                                  C
 G TG CTGTCACCGCATC               TCTTC CA  GT                                                                                                                                                                                                                                                                                  
G G  G             GGTCTTTATAATAAA     C  --  ATTGAATTGAGAAGAATTCGTTGGATATAGGAAGTGTGATTTAGTCGTAAACTATTTAATAAATTGGGTTAGTTAGAACCAATAACCACCCCCAAAACCTGTTTCTACTTGAAGCTTAAGTAGTTTATTGTATTTAATGTAGGTAACAATTTTTTTTATAATCTATATAATGAAATATAATGTAAGAAGATTAAAACTGAACTAAACGATTTCTGGTACTCACTTTTTTCCCACATATTTAGATTTATATATAACAAATTGACACAACTAAATA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End