SE3120242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10839
  • Fragaria vesca
  • SE3120242
  • Mutator
  • FrvM8
  • LG1:13054364-13054768
  • TATACTCNG
  • AGAATTAAATTCAGTTTACCCCCATGAAGTTTGGGAGTAACTTCATGTTAATCCCTATACTTTCAATTTCATCAATTTACCCCTCAAACTTTTGAATTTTCCTCAAGCGTGACCAAATGTCCTATATTCTGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCTTCTTTAT                       A  AA       A  A           A            CAA        A     C   CA       G      CC  AAG    A      G  C          ----CCAA     A  TTAACTGCTGATAATTTTAACCTTAACTGTGAGGCCAGTATCTAGAATT
                           AGAATTAAATTCAGTTTACCCCC TG  GTTTGGG GT ACTTCATGTTA TCCCTATACTTT   TTTCATCA TTTAC CCT  AACTTTT AATTTT  TC   CGTG CCAAAT TC TATATTCTGT        ATCGG CG                                                 
                           ||||||||||||||||||||||| ||  ||||||| || ||||||||||| ||||||||||||   |||||||| ||||| |||  ||||||| ||||||  ||   |||| |||||| || ||||||||||        ||||| ||                                                  
                           TCTTAATTTAAGTCAAATGGGGG AC  CAAACCC CA TGAAGTACAAT AGGGATGTGAAA   AAAGTAGT AAATG GGA  TTGAGAA TTAAAG  AG   GCAC GGTTTA AG GTATAAGGCA        TGGAA TT                                                 
                   ATATTTCT                       A  AC       C  C           C            ATA        C     T   AC       G      AC  ACG    G      -  A          AACTTAAC     A  AATAGTCGTCAATTCCAAGCTAAACCTGTATATTCCAGGCTAAACGGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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