SE3130244

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10841
  • Fragaria vesca
  • SE3130244
  • hAT
  • Frvh33
  • LG4:15885509-15885909
  • GCAGGGCA
  • GCAGGGCACAGTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
   AGG  A         -   --          TT -  G  GGTTCGGACCCCTGCCAGCTTTTGAATATGTACTTCATTAGTTAACTTGATTACCTTAATTATTACAATTATGCTATATTTTAACTCCCCCAAGTAAAATTTGGGAGATTCTTTCTCTTGTAATATGATAATTGGGAGATCCTTTCTCTTTTAATATTATAT
 GC   GC CAGTGGCGA AAC  TGTGCTTGGG  T GG AG                                                                                                                                                                  
 ||   || ||||||||| |||  ||||||||||  | || ||                                                                                                                                                                   
 CG   CG GTCACCGCC CGG  CTAATTCTCA  A GG CC                                                                                                                                                                  
A  GGA  -         T   TC          -- T  -  CACAGGTCTATACTTTGAGTAAAAGAATAGTAGTATTTGTATTTTTAACTTTATATTTATTTGTAATTTTATTCCTAGTTTTAAGTTACAAACTATATATAACATGTTTTAACTTATAATTAGTTCGTGGCTTTGATTCTACCTTCCTTAAGTAAACAAGGC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3