SE3120252

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10849
  • Fragaria vesca
  • SE3120252
  • Mutator
  • FrvM6
  • LG6:4841127-4841315
  • TATACTCNG
  • TGCTATTAACACATCTATTTTTGTTAGTAACACACC

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNNCATTTTTTTTGTTAT                          G         ACATCTATTT      CCACATATTTTTATTTTATTTACAAAC    CACTTGAATTTGAT
                                 TGCTATTAACACATCTATTTTTGTTA TAACACACC          TCCTAT                           TTGT              
                                 |||||||||||||||||||||||||| |||||||||          ||||||                           ||||              T
                                 ACGATAATTGTGTGGATAAAAACGAT ATTGTGTGG          AGGATA                           ACCA              
                 TTTTTTTTTACCCACC                          A         ----------      --------------------------T    CTCTTGGTTAGTAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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