SE3120253

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10850
  • Fragaria vesca
  • SE3120253
  • Mutator
  • FrvM12
  • LG4:18335333-18335757
  • TATACTCNG
  • GTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                  TATACTCN   ATNCTNNC          G A   T TACAATGTGTTAATGCATGTGAATGATGTGATGCATCAACTTTGTAAATTGAGTCCTCAAACTAGTAATATTAGTCCTTGAAGTTGTAAAATTTTCTAGTTACAACATTAGTAATCATGTGTGCTTAAAGTGGTAAAATGTGTGCTTAAAGTGGTAACTAAGTCCTTAAAGTGATTAAA
                          GTC        TATTCACATG A AAT C                                                                                                                                                                                   
                          |||        |||||||||| | ||| |                                                                                                                                                                                    
                          CAG        TATACTACGT A GTT G                                                                                                                                                                                   
TACACTTATCCCATTCCGATCCCATA   ---CTGCG          - -   - AAACAGGAGTTCAACATTTTACTCAGTAATTTCATCATTATAACCAGGAGTTTTAACATTATACTCAGCAATTTCAACATTTTTTTTAATCAATGTTGTAATCAGGAGTAAACAGGAATTTCACCATTAACTTAGGAGTTTCCAACATTATACTCAGGAGTCTCAACATTGTTGAAAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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