SE3130255

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10852
  • Fragaria vesca
  • SE3130255
  • hAT
  • Frvh17
  • LG1:7126544-7126748
  • TACATCCG
  • CGTTTACAGTAGTGTTCACCTGGTCAGTAATTGATTAAGAGATTCATAGTCAGTCACCGTTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TACATC  TT A                                         A     T           GTAA       -------       A      TTTT
      CG  T CAGTAGTGTTCACCTGGTCAGTAATTGATTAAGAGATTCAT GTCAG CACCGTTGGAT    ATCTAAG       AGTGGAG GATTTA    
      ||  | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    |||||||       ||||||| ||||||    T
      GC  A GTCATTACAAGTGGATTAGTCATTAACTGATTCTCTAAGTA TAGTC GTGGCAATCTA    TAGATTC       TTATTTT TTGAGT    
  ATTT  CT C                                         C     -           AATG       CCAATTT       G      TGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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