Plant MITE

SE3120256

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10853
Fragaria vesca
SE3120256
Mutator
FrvM37
LG3:25338600-25338969
TATACTCNG
TTTAGACTTCGA

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNC       TTC  AAATTT              A  CAA    A  GATCGAACAACTAATATGCAATATTTTGATCCGGTCATCCACATCGCATTATCATGCATGTATTCTAATACCATTAACAAAATTGAAACGGAAAAAAAATAGTCTTAAGTGTTTCCAACATAGGAGGTGAGAATCAACCT
                   TTTAGAC   GA      TTCTACGCACCAAG TG   ATGA CC                                                                                                                                            
                   |||||||   ||      |||||||||||||| ||   |||| ||                                                                                                                                            G
                   AGATTTG   CT      AAGATGCGTGGTTC AC   AACG TG                                                                                                                                            
                TTC       --C  -CACCT              C  ATA    -  GTAATTACACGTTCAGGAGTTTAACGACATGCGCTTCTAGCTTACTTCTGATCTATCTCTGGGATTTAAGAAAAGAAAGTAAAAGTAAAAAGTAGATTAGTTTAATTCACGGGTTTTATTCTCATAGAGAATAAGCTAGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120256

TATACTCNGTCATNCTNNCTTTAGACTTCGAAAATTTTTCTACGCACCAAGATGCAAATGAACCGATCGAACAACTAATATGCAATATTTTGATCCGGTCATCCACATCGCATTATCATGCATGTATTCTAATACCATTAACAAAATTGAAACGGAAAAAAAATAGTCTTAAGTGTTTCCAACATAGGAGGTGAGAATCAACCTGAGATCGAATAAGAGATACTCTTATTTTGGGCACTTAATTTGATTAGATGAAAAATGAAAATGAAAGAAAAGAATTTAGGGTCTCTATCTAGTCTTCATTCGATCTTCGCGTACAGCAATTTGAGGACTTGCACATTAATGGTGCAAATACACCTTGGTGCGTAGAATCCACTCCGTTTAGACTT

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