SE3120257

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10854
  • Fragaria vesca
  • SE3120257
  • Mutator
  • FrvM12
  • LG3:14022790-14023214
  • TACAAGTTT
  • TTTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
TACAAGTT     -AAAATT    AA      A      GTGAATGAT               -----------      T      C     C          A                        T              TTTTC                AATCATG   G             CTA           T ATTAAAAAAA    G   CAA
        TTTGG       CTAC  TGTGTT ATGCAT         GTGATGCATCAACTT           TGTAAA TGAGTC TCAAA TAGTAATATT GTCCTTGAAGTTGTAATATGAGTC TTAAAGTTGTAAAA     TAGTTACAACATTAGT       TGT CTTAAAGTGGTAA   AGTTCTTAAAG G          AGTT TTA   
        |||||       ||||  |||||| ||||||         |||||||||||||||           |||||| |||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||     ||||||||||||||||       ||| |||||||||||||   ||||||||||| |          |||| |||    
        GAACC       GATG  ATACAG TGCGTA         TACTACGTAGTTGAA           ACATTT ACTCAG AGTTT ATCATTATAA CAGGAGTTTTAACATTATACTCAG AATTTCAACATTTT     ATCAATGTTGTAATCA       ACA GAATTTCACCATT   TTAGGAGTTTC C          TCAG AGT   
   TTTTT     CCATTCC    CC      C      ---------               ACAGGAGTTCA      T      T     C          C                        C              TTTTA                GGAATAA   G             AAC           - AACATTATAC    G   CTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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