SE3120270

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10867
  • Fragaria vesca
  • SE3120270
  • Mutator
  • FrvM50
  • LG6:7452126-7452635
  • ATGATAAGG
  • GGAGAAAATCTTACATGCGACGGCCGTGCCACGTGGACGGTGCGACTGACCAATGGCAGGCCGACGCGTGGTTTTTTTTTTTTTC

Secondary structure and sequence

TSD    TIR
5'



3'
 ATGATAAG      AA                                                     C        G              TACA                 T   --    T           A        TT      C AACCGATC     CG  GA     A  -      -     CT   -   -------  -      GAT  CTT   G      AA   CAGGTGACAAGGATTTGTGGCAGC
         GGAGAA  TCTTACATGCGACGGCCGTGCCACGTGGACGGTGCGACTGACCAATGGCAGGC GACGCGTG TTTTTTTTTTTTTC    GCTCTTCTTCTTCCTTC GCA  CTCT CTCTGGCGAAA CCGATCTC  CTCCGG G        CCCTC  GC  AGCCG TC TCTTAT GCTCT  TCT CCA       GC GAAACC   CC   CCG CGAGCC  CGA                        
         ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    ||||||||||||||||| |||  |||| ||||||||||| ||||||||  |||||| |        |||||  ||  ||||| || |||||| |||||  ||| |||       || ||||||   ||   ||| ||||||  |||                         
         CCTTTT  AGAATGTACGTTGCCGGCACGGTGCACCTGCCACGCTGGCTGGTTACCGTCCG CTGCGCAC GGGGGGGGGGGGGG    CGAGAAGAAGAAGGAAG CGT  GAGA GAGGCCGCTTT GGCTAGGG  GAGGCC C        GGGAG  CG  TCGGC GG GGAGTG CGAGG  GGA GGT       CG CTTTGG   GG   GGC GCTCGG  CGC                        
GGAATAGTA      -A                                                     A        G              TTTG                 -   AG    C           -        --      A ACAAGAAA     -A  GA     -  C      G     TT   C   ATCGAAA  T      -AC  --C   A      --   GGAGGTGGTTGGGTACATTTTGGG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End