SE3140272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10869
  • Fragaria vesca
  • SE3140272
  • CACTA
  • FrvC2
  • LG2:12859312-12859511
  • AGA
  • CACTACCACAATATGAAGCAAAAGTCACATATCTTGTGTGAGCAATAGACGTGTTGCATTTTCCTATAAGTGTGGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AGA           T   A      A         C       A       AC        T    -------  -   A         -ATGAAGG    AGT
   CACTACCACAA ATG AGCAAA GTCACATAT TTGTGTG GCAATAG  GTGTTGCA TTTC       CT ATA GTGTGGCAA        TATT   
   ||||||||||| ||| |||||| ||||||||| ||||||| |||||||  |||||||| ||||       || ||| |||||||||        ||||   G
   GTGATGGTGTT TAC TCGTTT CGGTGTGTA AATACAC CGTTATC  CACAACGT AGAG       GA TAT TACACTGTT        GTAA   
AGA           T   C      C         C       C       CC        T    TATTTTA  G   A         AAAAGAGA    GAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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