Plant MITE

SE3130274

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10871
Fragaria vesca
SE3130274
hAT
Frvh37
LG5:6374615-6374829
TATACTCN
TGGTCACACAGCAGCCCCGTTCACCTGGTCAGTAGGCGACCAGGGATTATCTGGTCAACTGTCGTCAGATCTGCTCGATTTTGATCCAAAGGTTGAGACATA

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCT  -  C  A  GC                        C                             A    T                 A   T    -C   TCATA
                    TG GT AC CA  AGCCCCGTTCACCTGGTCAGTAGG GACCAGGGATTATCTGGTCAACTGTCGTC GATC GCTCGATTTTGATCCAA GGT GAGA  ATA     
                    || || || ||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| ||||  |||      
                    AC CA TG GT  TCGGGGCAAGTGGATCAGTCATCC CTGGTCTCTAATAGACCAGTTGACAGCAG CTAG CGAGCTAAAACTAGGTT CCG TTTT  TAT     
                   G  A  C  -  --                        A                             C    C                 C   T    AT   TTCGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130274

TATACTCNGTCATNCTNNCTTGGTCACACAGCAGCCCCGTTCACCTGGTCAGTAGGCGACCAGGGATTATCTGGTCAACTGTCGTCAGATCTGCTCGATTTTGATCCAAAGGTTGAGACATATCATAAGCTTTATTATTTTTGCCCTTGGATCAAAATCGAGCCGATCCGACGACAGTTGACCAGATAATCTCTGGTCACCTACTGACTAGGTGAACGGGGCTTGGTCACACAG

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