Plant MITE

SE3160275

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10872
Fragaria vesca
SE3160275
Micron
FrvMi2
LG2:20033253-20033644
TATATAT
TATATATAGACAGGGCTTCTC

Secondary structure and sequence

TSD TIR

5'

3'

          CAG   -     TGCTA      C                                    C              A                     C    A                                       G      CTT             A       -  CCAAAACT
TATATATAGA   GGC TTCTC     CGGACG CCGCACCGTTTTACGGTGCGGATTTCCGTCCGTTCG CACCGTACGGCGCC CGCGAGGGCGCGCCTCCACCC AGCG ACTCCAGCAGCTTCCCCGACCACTTTCCATCCCCGGCGA TCCGTT   TTCCAGTTTTCCG CGAGATC AC        
||||||||||   ||| |||||     |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||| ||||||| ||        T
ATATATATCT   CCG AAGAG     GCCTGC GGCGTGGCAAAATGCCACGCCTAAAGGCAGGCAAGT GTGGCATGTCGCGG GCGCTCTCGCGCGGAGGTGGG TCGC TGAGGTCGTCGAAGGGGCTGGTGAAAGGTAGGGGCCGCT AGGCGG   AAGGTCAAAAGGC GCTCTAG TG        
          ---   T     TACAC      A                                    T              C                     A    C                                       G      CTT             C       C  AAATAAAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3160275

TATATATAGACAGGGCTTCTCTGCTACGGACGCCCGCACCGTTTTACGGTGCGGATTTCCGTCCGTTCGCCACCGTACGGCGCCACGCGAGGGCGCGCCTCCACCCCAGCGAACTCCAGCAGCTTCCCCGACCACTTTCCATCCCCGGCGAGTCCGTTCTTTTCCAGTTTTCCGACGAGATCACCCAAAACTTCAAATAAAGTCGATCTCGCCGGAAAACTGGAATTCGGCGGAGTCGCCGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTCCGCTAGGGTGGAGGCGCGCTCTCGCGCGGCGCTGTACGGTGTTGAACGGACGGAAATCCGCACCGTAAAACGGTGCGGACGTCCGCACATGAGAATGCCTCTATATATA

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