SE3120277

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10874
  • Fragaria vesca
  • SE3120277
  • Mutator
  • FrvM15
  • LG5:10782184-10782589
  • TATACTCNG
  • AATTGATTGGATTAATTTCAGTTTATACTCTTGAGGTTTAGGGTTAACATCATTTCACTCCCCATACAAATAATTTTAAAAACTTACCCCCTAAAGTTTTCAATTTTCATAAATCATGTCCAATTGCTGAAATTTTGTCTAATTCGAACGTTAA

Secondary structure and sequence

TSD    TIR
5'



3'
TATACTCNGTCATNCTNNCT        -          C   T   A            A           A       - ---CCC    AAA       A    C       CT        C               T T -      C                 -C   C     TTTTGACTTCATAACTCACTAAA   ACTAAAATAGACTTATAACAACATAAATCGC
                    AATTGATT GGATTAATTT AGT TAT CTCTTGAGGTTT GGGTTAACATC TTTCACT C      ATAC   TAATTTT AAAA TTACCCC  AAAGTTTT AATTTTCATAAATCA G C CAATTG TGAAATTTTGTCTAATT  GAA GTTAA                       AAG                               
                    |||||||| |||||||||| ||| ||| |||||||||||| ||||||||||| ||||||| |      ||||   ||||||| |||| |||||||  |||||||| ||||||||||||||| | | |||||| |||||||||||||||||  ||| |||||                       |||                               C
                    TTAGTTAA CCTAATTAAA TCA ATG GAGGACTCCAAA CCCAATTGTAG AAAGTGA G      TATG   ATTAAAA TTTT AATGGGG  TTTCAGAG TTAAAAGTATTTAGT C G GTTAAC ATTTTAAAGCAGATTAA  CTT CAATT                       CTA                               
                            T          A   C   G            C           C       A AATATA    AAA       C    A       --        A               - T T      A                 AC   -     ---------------------TG   TCGTACTTTAGAATCTTTTTTACAGTATTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End