Plant MITE

SE3120279

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10876
Fragaria vesca
SE3120279
Mutator
FrvM52
unanchored:7835217-7835455
TATTTATAC
TATACTCGGAAATAACTTGAGTGACCAGCTATGGTCATTTATGGGTGACAAACACCAATGAG

Secondary structure and sequence

TSD TIR

5'

3'

TATT    CTC    -ATA    G      C  CTA         AT    G  AA   -        AGAT     A    CAACAATAATTATAAACAA     -T  AATATCCAAAACCCCCTTGTT
    TATA   GGAA    ACTT AGTGAC AG   TGGTCATTT  GGGT AC  ACA CCAATGAG    GGACA GTGT                   ACATA  CA                     
    ||||   ||||    |||| |||||| ||   |||||||||  |||| ||  ||| ||||||||    ||||| ||||                   |||||  ||                      
    ATAT   TCTT    TGAA TCACTG TC   ACCAGTGGA  TCCA TG  TGT GGTTACTT    CCTGT CACA                   AATTT  CG                     
 CTC    --T    GGAC    G      T  CCG         AT    A  -G   T        GTAC     G    --------------AATAA     TC  AACTGACGTTAAATTCCTGTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120279

TATTTATACTCGGAAATAACTTGAGTGACCAGCTATGGTCATTTATGGGTGACAAACACCAATGAGAGATGGACAAGTGTCAACAATAATTATAAACAAACATATCAAATATCCAAAACCCCCTTGTTATGTCCTTAAATTGCAGTCAAGCCTTTTAAAATAAACACGTGTCCCATGTTCATTGGTTGTGGTAACCTTAAGGTGACCAGCCCTTGTCACTGAAGTCAGGTTCTTTATACTC

Copy Cancel