SE3120283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10880
  • Fragaria vesca
  • SE3120283
  • Mutator
  • FrvM5
  • LG5:17066073-17066482
  • CAAAATAAG
  • GGAGAAATTTTTCAGTGCTACGGGAGGACACATACGTGGCAGTCTGACGTGGTTCTACATTTCAATTAAATTTAGACACGTGGATTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
CAAAATAA            C                ACA      G                                       C         CTTCGTGAAAAATTATTT      TTT      AGAC      -----------    TTTATGTTGTTTTTTAAATACTAAACCCTAAACCCTAATCCCTAAACCCTAAACCCTAAACCTTTA
        GGAGAAATTTTT AGTGCTACGGGAGGAC   TACGTG CAGTCTGACGTGGTTCTACATTTCAATTAAATTTAGACA GTGGATTTT                  CAACTA   TGTTAA    TATTTT           GGGT                                                                  
        |||||||||||| ||||||||||||||||   |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||                  ||||||   ||||||    ||||||           ||||                                                                   
        CCTCTTTAAAAA TCACGATGCCCTCCTG   GTGTAC GTCAGACTGCACCAGGATGTAAGGTTAGTTTAAATCTGT CACCTAAAA                  GTTGAT   ATAATT    ATAAAA           ACTT                                                                  
GAAGAAAA            T                ---      A                                       A         ----------------AT      TTT      GATT      AAATAAAAAAC    TACTGTAAGTACCCATAAATCGTTCAAGTTGGATCCCAAATCCCAATCCCATATCCCATATCCCAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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