SE3120285

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10882
  • Fragaria vesca
  • SE3120285
  • Mutator
  • FrvM11
  • LG6:23243977-23244473
  • TATACTCNG
  • AGGATTAATTTCAGTTTACCTCCATCAACTTTAGGTCGATCATCATGTTAGTCATTCTTCTTTCAATTTCATCAAAAACACCCCTCAACTCCCAATTTTCATCAGCCGCGCATGTCCAAACCTCCAATCTCCATCCAATTCCTCTGTCAAGTGATGACTTGATATCAAGAAGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTTTTCTTT                  C                                  A                                     C                C               C                  C             C                 AAAAAAAGGAAAAATAGACAAA  G   -     CCCACCAAAATCACTAAGGTTAGGGGGTTGTGATGGGAACG
                          AGGATTAATTTCAGTTTA CTCCATCAACTTTAGGTCGATCATCATGTTAGTC TTCTTCTTTCAATTTCATCAAAAACACCCCTCAACTC CAATTTTCATCAGCCG GCATGTCCAAACCTC AATCTCCATCCAATTCCT TGTCAAGTGATGA TTGATATCAAGAAGAAA                      TT CAT TCAAT                                         
                          |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||                      || ||| |||||                                         A
                          TCCTGATTAAAGTCAAAT GGGGTAGTTGAAATCCAGCTAGTAGTACAATCAG AAGAAGAAAGTTAAAGTAGTTTTTGTGGGGAGTTGAG GTTAAAAGTAGTCGGT CGTACAGGTTTGGAG TTAGAGGTAGGTTAAGGA ACAGTTCACTACT AACTATAGTTCTTCTTT                      TT AAG CTTTC                                         
                  ATTTCTTT                  T                                  G                                     A                A               A                  A             A                 ------------------CAGT  -   A     AATGGAAAGCTTGGTCAAAAGGGGGTATAGCTATGTGTAGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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