SE3120289

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10886
  • Fragaria vesca
  • SE3120289
  • Mutator
  • FrvM6
  • LG2:3715737-3715924
  • TATACTCNG
  • GG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCAAAAAAATA  CTAT                C                     ATCTATTTTCCTATCCACACATTTTTATT    TTACAAATTTGTCACTTGAA
                           GG    TGCTATTAACATACCT TTTTTGCTATTAACACACCCT                             TTAT                    
                           ||    |||||||||||||||| |||||||||||||||||||||                             ||||                    T
                           CC    ACGATAATTGTGTGGG AAAAATGATAATTGTGTGGGG                             ACCA                    
                   ATAAAAAA  CACC                T                     ------------------------AATAT    CTCTTGGTTAATAATGAGTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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