Plant MITE

SE3130290

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10887
Fragaria vesca
SE3130290
hAT
Frvh6
LG2:11458036-11458239
ATGTCCCT
CAGTAGTGTTCACCTGGTTAGTTACTGACCAACAAAATTATAGTCAACCACCGTTGCATTTACATCCAAGGGTGAGAAG

Secondary structure and sequence

TSD TIR

5'

3'

ATGTCCCTAA     G       C               C  CA       A              C  T  C     A     A    TATTATTTTAAAG
          CAGTA TGTTCAC TGGTTAGTTACTGAC AA  AAATTAT GTCAACCACCGTTG AT TA ATCCA GGGTG GAAG             
          ||||| ||||||| ||||||||||||||| ||  ||||||| |||||||||||||| || || ||||| ||||| ||||             T
          GTCAT ACAAGTG ACCAGTCGATGACTG TT  TTTAGTA CAGTTGGTGGCAAC TA AT TAGGT CCCAC CTTT             
AATCCCTGTA     A       T               A  CC       C              C  T  T     A     -    TGTTTTGTTGAAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3130290

ATGTCCCTAACAGTAGTGTTCACCTGGTTAGTTACTGACCAACAAAATTATAGTCAACCACCGTTGCATTTACATCCAAGGGTGAGAAGTATTATTTTAAAGTTAAGTTGTTTTGTTTTCCACCCATGGATTTATATCCAACGGTGGTTGACCATGATTTCCTTAGTCAGTAGCTGACCATGTGAACAATACTGATGTCCCTAA

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