SE3160293

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10890
  • Fragaria vesca
  • SE3160293
  • Micron
  • FrvMi13
  • LG4:2282817-2283165
  • TGTATGT
  • TGCAGAAAGGATAGAGAGCGGACGTTCGCACTCTGGCTTAAAGTGCGGACTTCGTCCGTTCTCTGCCGTCTCACGCCGGTGACGGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TGTATG     AAA    AG                                                           C             TCTCT  T   C   CGAC   ACAGGCTTCCAGGACGGTTTCTCTCCTTCCAGGACTGGCCGGCGACAAGTTTTCCGGTCGGATTG
      TGCAG   GGAT  AGAGCGGACGTTCGCACTCTGGCTTAAAGTGCGGACTTCGTCCGTTCTCTGCCGTCTCA GCCGGTGACGGCT     CC TCC GGA    AGC                                                                 
      |||||   ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||     || ||| |||    |||                                                                 A
      ATGTC   CCTA  TCTCGCCTGCAGGCGTGAGGCCGAATTTCACGCCTGAAGCAGGCAAGAGACGGCAGAGT CGGCCGCTGCCGA     AG AGA GGA    AGG                                                                 
           CGG    CA                                                           A             -----  -   -   ----   TCCTGACCGGCCGCTGTTCAAAAGGCCGGTTGGAACTAGTTAGTACCACAAAAGGCAGGTCTCGA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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