SE3160294

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10891
  • Fragaria vesca
  • SE3160294
  • Micron
  • FrvMi1
  • LG6:21092331-21092752
  • TATATAT
  • TATATATACAGTTCCTATCCAGAGCAAAGCTTCGCACTGAAATTAAAGTGTGAAGGTCCTTTTTTTGGCTCACTTTATGGTCACGTATCCACATCTCCGCCGTTCATTTTTTAGAACCTAATGTATTGATCACTTCTGCCAAGTTTCATCCAATTTGACGATTGTTTAAGCTTTC

Secondary structure and sequence

TSD    TIR
5'



3' 
                         A         A                             T          A                   C         T          C        T        C                      C       T   CTT  ---------ATAA   -  ATTTACACGAATAGTTCTTG
TATATATACAGTTCCTATCCAGAGC AAGCTTCGC CTGAAATTAAAGTGTGAAGGTCCTTTTTT GGCTCACTTT TGGTCACGTATCCACATCT CGCCGTTCA TTTTTAGAAC TAATGTAT GATCACTT TGCCAAGTTTCATCCAATTTGA GATTGTT AAG   TC             TCG TG                    
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||| ||||||| |||   ||             ||| ||                    T
ATATATATGTCAAGGATAGGTCTCG TTCGAAGCG GACTTTAATTTCACACTTCCAGGAAAAAA CCGAGTGAAA GCCAGTGCATAGGTGTAGA GTGGTAAGT AAAAATCTTG ATTACATA TTAGTGAA ACGGTTCAAAGTAGGTTAAACT TTAATAA TTC   AG             ACG AC                    
                         C         A                             -          A                   A         C          T        T        T                      A       -   CAC  CTTAACACACTTT   T  TTGTCTGTTTTGAGACAGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3