Plant MITE

SE3120295

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10892
Fragaria vesca
SE3120295
Mutator
FrvM40
unanchored:5991269-5991469
TATACTCNG
GGATTCAAATTTGCCAACCACCTTTTATTTGACCATCCTAATGACTACTATTTAGATTGGTGTCACATGTCTCTTTAAATTGTTTTAC

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNNCAATATCATC             C       C    A                                   T      T   -   -AAA     TT  TTT
                            GGATTCAAATTTG CAACCAC TTTT TTTGACCATCCTAATGACTACTATTTAGATTGGTG CACATG CTC TTT    TTGTT  AC   
                            ||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| |||||| ||| |||    |||||  ||    
                            CCTAAGTTTAAAC GTTGGTG AAAA AAACTGGTGGGATTACTGGTGATAGATCTAACCAC GTGTAC GAG AAA    AATAG  TG   
                   CTACTATAA             A       T    G                                   T      -   T   AAAA     -T  TTA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120295

TATACTCNGTCATNCTNNCAATATCATCGGATTCAAATTTGCCAACCACCTTTTATTTGACCATCCTAATGACTACTATTTAGATTGGTGTCACATGTCTCTTTAAATTGTTTTACTTTATTGTTGATAAAAAAAAATGAGCATGTGTCACCAATCTAGATAGTGGTCATTAGGGTGGTCAAAGAAAATGTGGTTGACAAATTTGAATCCAATATCATC

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