SE3150299

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10896
  • Fragaria vesca
  • SE3150299
  • PIF/harbinger
  • FrvP26
  • LG1:15903649-15904071
  • TAT
  • AGAGCAAGTCCAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
TATACTCNGTCATNCTNCTA               GATT     A       GATTTTCTCTATTTTAAGGAATATGGGGTTATTTTTTATTCCAACAGCTTCCCTATCTCATTCCCTAAATTAGGGAAAGAGATGAAAGAGAAACTTTGCTTCCATATATTTACAGATTCCCTAAAACTATTTAGGGAAAGAAGAATTGAATGTTGCACATTCTTCAAGGCTCAAAGATAA
                    AGAGCAAGTCCAACA    CCTTA ATTCTTT                                                                                                                                                                                    
                    |||||||||||||||    ||||| |||||||                                                                                                                                                                                     
                    TCTCGTTCAGGTTGT    CGAAG GAATATA                                                                                                                                                                                    
                  AA               ----     -       AAAGATGTATTATCCCTTCGTTTTGAGTTTTAGAAATTTTTAAAACATATGGTTTAGGTTGTCAAAGGGATAAAATTTCTAAGTTTATAAATAATATTGTTGTTAGGAGTAAATAATGTTATATTATTATTCATATTTTTAAATTTTCAAATAAAAAATCTTGTTTAATATAAAAGAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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