Plant MITE

SE3150301

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10898
Fragaria vesca
SE3150301
PIF/harbinger
FrvP24
LG4:1757999-1758594
TAT
AGGGCATCTCCAACAATCCTTTTTATACCCATACTCGTAC

Secondary structure and sequence

TSD TIR

5'

3'

TATACTCNGTCATNCTNCTT                 CC  T             C    ---C    --        CACCTAAACCTATTACTATTCAAACATATATTCCATCTCCAACCATTATATCAAAACTCATATTCATACCCAAATTTTAATCATTTAAAAACAATACTTTCAGCCTCATTTTTTCTTTTTCCAGCTGAATTTATCTGGACCTTTCATTTTGAATGAAAGGCAAATCTGGGCCACACATTTTATGACTGTTGGAGGACCATTGGCGAGCTCACGTGAAACCACCCACACCAATCCAGCTCT
                    AGGGCATCTCCAACAAT  TT TTATACCCATACT GTAC    TATA  TTTTGAGT                                                                                                                                                                                                                                                
                    |||||||||||||||||  || ||||||||||||| ||||    ||||  ||||||||                                                                                                                                                                                                                                                C
                    TCCCGTAGAGGTTGTTG  AA GATATGGGTATGG TATG    TTGG  ATTTTTGA                                                                                                                                                                                                                                                
                  AT                 TC  C             A    AGTA    GT        GTAGAAATTGTTATTTTTGAGTATGGATTAATACCCAAGGATGGTCTGAGTGCCGGGTTTTACCCAGTTCAGCATCCCTCCTTTGGGTAAACACCCACTGCGCCCTGGGTCTTCCGTCGTCGACGTACACTTCTCAGACGTTGTCGTCCTCGGTGCGCGGTCAGTAGGGTGGACGTCGTCTTCGCGCGTTTTTCTGTTTTTTTGACTGTCTTTTCTCTCTGCGCGCTTGTTGCGCAACTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3150301

TATACTCNGTCATNCTNCTTAGGGCATCTCCAACAATCCTTTTTATACCCATACTCGTACCTATATTTTGAGTCACCTAAACCTATTACTATTCAAACATATATTCCATCTCCAACCATTATATCAAAACTCATATTCATACCCAAATTTTAATCATTTAAAAACAATACTTTCAGCCTCATTTTTTCTTTTTCCAGCTGAATTTATCTGGACCTTTCATTTTGAATGAAAGGCAAATCTGGGCCACACATTTTATGACTGTTGGAGGACCATTGGCGAGCTCACGTGAAACCACCCACACCAATCCAGCTCTCTTCAACGCGTTGTTCGCGCGTCTCTCTTTTCTGTCAGTTTTTTTGTCTTTTTGCGCGCTTCTGCTGCAGGTGGGATGACTGGCGCGTGGCTCCTGCTGTTGCAGACTCTTCACATGCAGCTGCTGCCTTCTGGGTCCCGCGTCACCCACAAATGGGTTTCCTCCCTACGACTTGACCCATTTTGGGCCGTGAGTCTGGTAGGAACCCATAATTAGGTATGAGTTTTTATTGTTAAAGATGAGTTTTTATGGGTTATGAGTATAGGTATGGGTATAGCAACTGTTGTTGGAGATGCCCTTA

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