SE3120303

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10900
  • Fragaria vesca
  • SE3120303
  • Mutator
  • FrvM55
  • LG3:20402114-20402516
  • ATTAATGTA
  • ATTAATGTAGGATTAAATTCATTTTACCCTCCTGACGTTTCGAGTTGACCTCATTTCAGCCCCCAATCTCCCAATTTTGAAAATTTACCCCTGAAGTTTCTAATTTTCATCAGTCTAGCCTATTTGTTAAGATTTTGTCCAATTTGAAAGTTAAATGCT

Secondary structure and sequence

TSD    TIR
5'



3'
         GTA                      C   C               C                   C                   -            T          CTA  C            T      C  T     A     --A  -  --A    GAAA CTTAGAAATTGGGAAATAAAGTGTGATTTTT
   ATTAAT   GGATTAAATTCATTTTACCCTC TGA GTTTCGAGTTGACCT ATTTCAGCCCCCAATCTCC AATTTTGAAAATTTACCCC TGAAGTTTCTAA TTTCATCAGT   GC TATTTGTTAAGA TTTGTC AA TTGAA GTTAA   TG CT   ACAT    T                               
   ||||||   |||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||   || |||||||||||| |||||| || ||||| |||||   || ||   ||||    |                                
   TAATTA   CCTAATTTAAGTAAAATGGGAG ACT CAAAGCTCAACTGGA TAAAGTCGGGGGTTAGAGG TTAAAACTTTTAAATGGGG ACTTCAAAGATT AAAGTAGTCG   CG ATAAGCGATTCT AGGTAG TT AACTT CAATT   AC GA   ATCG    G                               
ATG      ---                      T   C               A                   A                   G            T          AAA  A            T      T  T     G     AAA  T  AAA    ---A TGAAAATCCCGATCTAGTCAGCCAATTGCTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End