Plant MITE

SE3120304

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10901
Fragaria vesca
SE3120304
Mutator
FrvM20
LG6:20139685-20140377
ATAAATTAT
ATAAATTATGAGAAATTTTATTAACACATCCCTAATTATTAGATACACAT

Secondary structure and sequence

TSD TIR

5'

3'

    A                              TTA            CTCA     A     CCACC   -T      ATTATTTTAAC    TATTAGATACACATACCCAACATTTCTACAATACCCTCACTAAATACACAATCCATTTACTAAATACACATACTTTTTTAGACCTGTTACTCAATTTATTCAAAAAAAGAAAAAGAAAAAAGAGAGGATTATATATATAGCATCATCCCAAGTTCTAGTTTGGTGTCAGTTTGAACGACCTAGCATGCGTGAATAGTAGAATCTAAATTTCAAACTTCAATTTGTACTATCGATAGTAAAACCTTGATAATTTAATATTTGATA
ATAA TTATGAGAAATTTTATTAACACATCCCTAA   TTAGATACACAT    TTTTT ATACA     TAT  GACTTT           ATTC                                                                                                                                                                                                                                                                        
|||| ||||||||||||||||||||||||||||||   ||||||||||||    ||||| |||||     |||  ||||||           ||||                                                                                                                                                                                                                                                                         
TATT AATACTCTTTAAAATAATTGTGTAGGGATT   GATTTATGTGTA    AAAAA TATGT     ATA  CTGAAA           CCAT                                                                                                                                                                                                                                                                        
    A                              TAC            -TAA     A     TTAAT   TT      --------CAC    GCATTTTAATGGTTTTCTCTGTAAGTATAGTTTTCATTTCTTTTGAACAACTTTATTTTATAGAGCGAATTCTCAAAAGAAGAAAATATGCTCTTGTTGCATACACTTCTATGATTCGGGATATTAAATTTGGAGATATTTAATTATTACAGCCCTGGCCTTTTTTTATAATAAATTAGCCCTAACAATTAAATAACTGCTGTTAAAACGATTAAGAAATAAAGCCCTGACTGTTTTTTATAATATATTAGTTCCAATAATTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120304

ATAAATTATGAGAAATTTTATTAACACATCCCTAATTATTAGATACACATCTCATTTTTAATACACCACCTATTGACTTTATTATTTTAACATTCTATTAGATACACATACCCAACATTTCTACAATACCCTCACTAAATACACAATCCATTTACTAAATACACATACTTTTTTAGACCTGTTACTCAATTTATTCAAAAAAAGAAAAAGAAAAAAGAGAGGATTATATATATAGCATCATCCCAAGTTCTAGTTTGGTGTCAGTTTGAACGACCTAGCATGCGTGAATAGTAGAATCTAAATTTCAAACTTCAATTTGTACTATCGATAGTAAAACCTTGATAATTTAATATTTGATAAATTAATAACCTTGATTATATAATATTTTTTGTCAGTCCCGAAATAAAGAATTAGCAAAATTGTCGTCAATAAATTAACAATCCCGATTAAATAATATTTTTTTCCGGTCCCGACATTATTAATTTATAGAGGTTTAAATTATAGGGCTTAGTATCTTCACATACGTTGTTCTCGTATAAAAGAAGAAAACTCTTAAGCGAGATATTTTATTTCAACAAGTTTTCTTTACTTTTGATATGAATGTCTCTTTTGGTAATTTTACGTACCCACAAAGTCTTATATAATTTGTATAAAAAAAATATGTGTATTTAGCATTTAGGGATGTGTTAATAAAATTTCTCATAAATTAT

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