SE3130306

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10903
  • Fragaria vesca
  • SE3130306
  • hAT
  • Frvh26
  • LG3:8865946-8866725
  • CCAGAAGT
  • GTTAGAGGTGGCAAACGGGC

Secondary structure and sequence

TSD    TIR
5'



3'
CCAGAA T                  -------C      -  C   -  -  --   -  CCTAATCGGGTTTCGGGCCGTGCTTGGGCTGGCCCATGACGGGCCACTTCTTAACGGGCTCGAGCTTGGGCCGGCCCATTTACTCCAATGTAAGGCCCAGCCCGACCCACGGCCCAAGCCCATAACATGGTGGGCCGTGCTCGGGCCGGGCCGGCCCGGGCCATGAACGGGCCATGTTGGGCCCGTTTCTTGTTGAAAATTGAAAATGGTCGAGATGAATGTCCTGTACCACCGCTTCTACTCTCATAATCTCAACTTTTAATTATACATGATACGATTACAAACCAAAATTAATTCACATAATCTATCGATCATTTTTTTCTTTGTTAACAAACT
      G TAGAGGTGGCAAACGGGC        GGCCCA GC CGG CT AA  GCC CG                                                                                                                                                                                                                                                                                                                                                
      | ||||||||||||||||||        |||||| || ||| || ||  ||| ||                                                                                                                                                                                                                                                                                                                                                 
      C ATCTCCACCGTTTGCCCG        TGCCCG GC TCG GC CG  CTG GC                                                                                                                                                                                                                                                                                                                                                
TGAAGA C                  ACAATTCG      T  -   T  T  TG   T  AATTTTTCGCCGAACCTTGCCGGGTTCGGGCATTGCCGGGCCGTGCCGGGTTCGGGCAATATATAAGATTACCCAACCCGACCCGAATCTTTTTACTCGGGTACCTGGGCCGGGCCGTCCCGGGTTCGTGCTATTATACTCCGGGTGCCGATATTTTATATTAAAATATTTATACTTCTATTGTATAAATATTTATTATTTGAATCAAAACTCATACTTGTTATATGAATATATGATTATTAATAAATAAACTCATACTTAAACATAAGGAAATCTGAGTATTCTTCAAAAACGGATTTTTAAATAATTAACATTCGTAAATAGTGAATAAAGAAA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End