SE3130309

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_10906
  • Fragaria vesca
  • SE3130309
  • hAT
  • Frvh40
  • LG4:10588604-10589171
  • ATTGAAAC
  • CAATGTTCTAAAAGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
ATTGAAAC   TG           G      G         CGGTAACCCACAGCCTAGAGCCTGGACAGCCTAGGCGAGGATTAGGCGGGGACTAGGCGATTTGTATTTTTTAAGATTTATTAATTAAAAATATATATTTTATGCAATTTAATATTTGAAAACGGTCAAATATAGATAAATTATTCAACATAATCTAGTCATACTCATTTATAAAATAAATTATAACTAAAATTTAGCATAACTTCCTGTAAAAGTGAGCAACAACAGCAATAAACATATAAAC
        CAA  TTCTAAAAGGC CTAGGC CTAGGCGGG                                                                                                                                                                                                                                                    
        |||  ||||||||||| |||||| |||||||||                                                                                                                                                                                                                                                     
        GTT  AAGATTTTCCG GGGCGG ATCCTGGCG                                                                                                                                                                                                                                                    
CAAAGTTA   CG           -      -         GATCAGGGGCGGATCCGAGATCCGACATTGTTCGGCAGAGCGAAAAGAAGGTCCGGAAACACGGTCCGACACCCGCTAATCCGCCGGCGGATCGAGCGGATTTACGGCGGATCGGGCGGATATACGGCGGAACGGGCGGATCCGACGATTCGAGATGCCGATAAAAACAAAAGAAAAACACACCCTAACAATATAACACCCCTCATACTCTCATATTCTCAATTAACACACAAATTTTAATCTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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