Plant MITE

SE3120310

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_10907
Fragaria vesca
SE3120310
Mutator
FrvM56
LG5:11474236-11474422
TAAAAGTTG
TTGGAATTTGGCTTCCATACTTGGATTTATGTTGTTTAGACTTGTTTGAATGACTTCTAACCATTGGATTGAGTA

Secondary structure and sequence

TSD TIR

5'

3'

 TAAAAG     A     C   CA A          T       A  C       A   A   C            T     CAATCTAA   CGT
       TTGGA TTTGG TTC  T CTTGGATTTA GTTGTTT GA TTGTTTG ATG CTT TAACCATTGGAT GAGTA        GAC   
       ||||| ||||| |||  | |||||||||| ||||||| || ||||||| ||| ||| |||||||||||| |||||        |||    
       AACCT AGGCC AAG  A GAACCTAAAT TAACGAA CT AACGAAC TAC GAA ATTGGTAATCTA CTCAT        CTG   
GTTGAAA     -     T   AG C          T       C  A       C   A   T            C     ---TTCTA   TAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE3120310

TAAAAGTTGGAATTTGGCTTCCATACTTGGATTTATGTTGTTTAGACTTGTTTGAATGACTTCTAACCATTGGATTGAGTACAATCTAAGACCGTTATGTCATCTTTACTCCATCTAATGGTTATAAGACATCCAAGCAAATCCAAGCAATTTAAATCCAAGCAGAGAATCCGGATCCAAAAAGTTG

Copy Cancel